Data Model

class CMDModelAPI(BaseModel):
    """Model for the model command line argument."""

    infile: str
    outfile: str = Field(default="spectrafit_results")
    input: str = Field(default="fitting_input.toml")
    oversampling: bool = DataPreProcessingAPI().oversampling
    energy_start: Optional[float] = DataPreProcessingAPI().energy_start
    energy_stop: Optional[float] = DataPreProcessingAPI().energy_stop
    smooth: Optional[int] = DataPreProcessingAPI().smooth
    shift: Optional[float] = DataPreProcessingAPI().shift
    column: List[Union[int, str]] = DataPreProcessingAPI().column
    separator: str = "\t"
    decimal: str = "."
    header: Optional[int] = None
    comment: Optional[str] = None
    global_: int = Field(GlobalFittingAPI().global_)
    autopeak: Union[AutopeakAPI, bool, Any] = False
    noplot: bool = False
    version: bool = False
    verbose: int = Field(default=0, ge=0, le=2)
    description: Optional[DescriptionAPI] = Field(DescriptionAPI())

class DescriptionAPI(BaseModel):
    """Model for the description command line argument."""

    project_name: str = Field(
        default="FittingProject",
        alias="projectName",
        description="Name of the project",
    )
    project_details: str = Field(
        default=f"Fitting Project via SpectraFit v{__version__}",
        alias="projectDetails",
        description="Project details",
    )
    keywords: List[str] = Field(
        default=["spectra"], description="Keywords for the project"
    )
    authors: List[str] = Field(
        default=["authors"], description="Authors of the project"
    )
    references: List[str] = Field(
        default=["https://github.com/Anselmoo/spectrafit"],
        alias="refs",
        description="References for the project",
    )
    metadata: Optional[Union[Dict[Any, Any], List[Any]]] = Field(
        default=None, description="Metadata for the project"
    )
    license: str = "BSD-3-Clause"
    version: str = __version__
    host_info: str = sha256(f"{getuser()}@{gethostname()}".encode()).hexdigest()
    timestamp: str = datetime.now().strftime("%Y-%m-%d %H:%M:%S")
    id_: str = Field(
        default=str(uuid4()), alias="id", description="Unique ID of the project"
    )

    @field_validator("references")
    @classmethod
    def check_references(cls, v: List[str]) -> Optional[List[str]]:
        """Check if the list of references have valid URLs."""
        return [str(HttpUrl(url)) for url in v]

class AmplitudeAPI(BaseModel):
    """Definition of the amplitude of the models distributions."""

    max: Optional[float] = Field(default=None, description="Maximum amplitude.")
    min: Optional[int] = Field(default=None, description="Minimum amplitude.")
    vary: bool = Field(default=True, description="Vary the amplitude.")
    value: Optional[float] = Field(default=None, description="Initial Amplitude value.")
    expr: Optional[str] = Field(default=None, description=__description__)

class AtanAPI(BaseModel):
    """Definition of the Step of the models distributions."""

    amplitude: AmplitudeAPI = AmplitudeAPI()
    center: CenterAPI = CenterAPI()
    sigma: SigmaAPI = SigmaAPI()

class CGaussianAPI(BaseModel):
    """Definition of the cumulative Gaussian of the models distributions."""

    amplitude: AmplitudeAPI = AmplitudeAPI()
    center: CenterAPI = CenterAPI()
    fwhmg: FwhmgAPI = FwhmgAPI()

class CLorentzianAPI(BaseModel):
    """Definition of the cumulative Lorentzian of the models distributions."""

    amplitude: AmplitudeAPI = AmplitudeAPI()
    center: CenterAPI = CenterAPI()
    fwhml: FwhmlAPI = FwhmlAPI()

class CVoigtAPI(BaseModel):
    """Definition of the cumulative Voigt of the models distributions."""

    center: CenterAPI = CenterAPI()
    fwhmv: FwhmvAPI = FwhmvAPI()
    gamma: GammaAPI = GammaAPI()

class CenterAPI(BaseModel):
    """Definition of the center of the models distributions."""

    max: Optional[float] = Field(default=None, description="Maximum center.")
    min: Optional[int] = Field(default=None, description="Minimum center.")
    vary: bool = Field(default=True, description="Vary the center.")
    value: Optional[float] = Field(default=None, description="Initial Center value.")
    expr: Optional[str] = Field(default=None, description=__description__)

class CoefficientAPI(BaseModel):
    """Definition of the Coefficient of the models distributions."""

    max: Optional[float] = Field(default=None, description="Maximum coefficient.")
    min: Optional[int] = Field(default=None, description="Minimum coefficient.")
    vary: bool = Field(default=True, description="Vary the coefficient.")
    value: Optional[float] = Field(
        default=None, description="Initial coefficient value."
    )
    expr: Optional[str] = Field(default=None, description=__description__)

class ConfIntervalAPI(BaseModel):
    """Definition of Confidence Interval Function."""

    p_names: Optional[List[str]] = Field(
        default=None, description="List of parameters names."
    )
    trace: bool = Field(
        default=True, description="Trace of the confidence interfall matrix."
    )
    maxiter: int = Field(
        default=200,
        gt=1,
        le=2000,
        description="Maximum number of iteration",
    )
    verbose: bool = Field(
        default=False, description="Print information about the fit process."
    )
    prob_func: Optional[Callable[[float], float]] = Field(
        default=None, description="Probing function."
    )

class ConstantAPI(BaseModel):
    """Definition of the Constant of the models distributions."""

    amplitude: AmplitudeAPI = AmplitudeAPI()

class DecayAPI(BaseModel):
    """Definition of the Decay of the Exponential of the models distributions."""

    max: Optional[float] = Field(default=None, description="Maximum decay rate.")
    min: Optional[int] = Field(default=None, description="Minimum decay rate.")
    vary: bool = Field(default=True, description="Vary the decay rate.")
    value: Optional[float] = Field(
        default=None, description="Initial decay rate value."
    )
    expr: Optional[str] = Field(default=None, description=__description__)

class DistributionModelAPI(BaseModel):
    """Definition of the models distributions."""

    gaussian: GaussianAPI = GaussianAPI()
    lorentzian: LorentzianAPI = LorentzianAPI()
    voigt: VoigtAPI = VoigtAPI()
    pseudovoigt: PseudovoigtAPI = PseudovoigtAPI()
    exponential: ExponentialAPI = ExponentialAPI()
    power: PowerAPI = PowerAPI()
    linear: LinearAPI = LinearAPI()
    constant: ConstantAPI = ConstantAPI()
    erf: ErfAPI = ErfAPI()
    heaviside: HeavisideAPI = HeavisideAPI()
    atan: AtanAPI = AtanAPI()
    log: LogAPI = LogAPI()
    cgaussian: CGaussianAPI = CGaussianAPI()
    clorentzian: CLorentzianAPI = CLorentzianAPI()
    cvoigt: CVoigtAPI = CVoigtAPI()
    polynom2: Polynomia2API = Polynomia2API()
    polynom3: Polynomia3API = Polynomia3API()
    pearson1: Pearson1API = Pearson1API()
    pearson2: Pearson2API = Pearson2API()
    pearson3: Pearson3API = Pearson3API()
    pearson4: Pearson4API = Pearson4API()

class ErfAPI(BaseModel):
    """Definition of the Step of the models distributions."""

    amplitude: AmplitudeAPI = AmplitudeAPI()
    center: CenterAPI = CenterAPI()
    sigma: SigmaAPI = SigmaAPI()

class ExponentAPI(BaseModel):
    """Definition of the Exponent of the Linear of the models distributions."""

    max: Optional[float] = Field(default=None, description="Maximum exponent.")
    min: Optional[int] = Field(default=None, description="Minimum exponent.")
    vary: bool = Field(default=True, description="Vary the exponent.")
    value: Optional[float] = Field(default=None, description="Initial exponent value.")
    expr: Optional[str] = Field(default=None, description=__description__)

class ExponentialAPI(BaseModel):
    """Definition of the Exponential of the models distributions."""

    amplitude: AmplitudeAPI = AmplitudeAPI()
    decay: DecayAPI = DecayAPI()
    intercept: InterceptAPI = InterceptAPI()

class FwhmgAPI(BaseModel):
    """Definition of the FWHM Gaussian of the models distributions."""

    max: Optional[float] = Field(
        default=None,
        description="Maximum Full Width Half Maximum of the Gaussian Distribution.",
    )
    min: Optional[int] = Field(
        default=None,
        description="Minimum Full Width Half Maximum of the Gaussian Distribution.",
    )
    vary: bool = Field(
        default=True,
        description="Vary the Full Width Half Maximum of the Gaussian Distribution.",
    )
    value: Optional[float] = Field(
        default=None,
        description="Initial Full Width Half Maximum of "
        "the Gaussian Distribution value.",
    )
    expr: Optional[str] = Field(default=None, description=__description__)

class FwhmlAPI(BaseModel):
    """Definition of the FWHM Lorentzian of the models distributions."""

    max: Optional[float] = Field(
        default=None,
        description="Maximum Full Width Half Maximum of the Lorentzian Distribution.",
    )
    min: Optional[int] = Field(
        default=None,
        description="Minimum Full Width Half Maximum of the Lorentzian Distribution.",
    )
    vary: bool = Field(
        default=True,
        description="Vary the Full Width Half Maximum of the Lorentzian Distribution.",
    )
    value: Optional[float] = Field(
        default=None,
        description="Initial Full Width Half Maximum of "
        "the Lorentzian Distribution value.",
    )
    expr: Optional[str] = Field(default=None, description=__description__)

class FwhmvAPI(BaseModel):
    """Definition of the FWHM Voigt of the models distributions."""

    max: Optional[float] = Field(
        default=None,
        description="Maximum Full Width Half Maximum of the Voigt Distribution.",
    )
    min: Optional[int] = Field(
        default=None,
        description="Minimum Full Width Half Maximum of the Voigt Distribution.",
    )
    vary: bool = Field(
        default=True,
        description="Vary the Full Width Half Maximum of the Voigt Distribution.",
    )
    value: Optional[float] = Field(
        default=None,
        description="Initial Full Width Half Maximum of the Voigt Distribution value.",
    )
    expr: Optional[str] = Field(default=None, description=__description__)

class GammaAPI(BaseModel):
    """Definition of the Gamma of the Voigt of the models distributions."""

    max: Optional[float] = Field(default=None, description="Maximum gamma.")
    min: Optional[int] = Field(default=None, description="Minimum gamma.")
    vary: bool = Field(default=True, description="Vary the gamma.")
    value: Optional[float] = Field(default=None, description="Initial Gamma value.")
    expr: Optional[str] = Field(default=None, description=__description__)

class GaussianAPI(BaseModel):
    """Definition of the Gaussian of the models distributions."""

    amplitude: AmplitudeAPI = AmplitudeAPI()
    center: CenterAPI = CenterAPI()
    fwhmg: FwhmgAPI = FwhmgAPI()

class HeavisideAPI(BaseModel):
    """Definition of the Step of the models distributions."""

    amplitude: AmplitudeAPI = AmplitudeAPI()
    center: CenterAPI = CenterAPI()
    sigma: SigmaAPI = SigmaAPI()

class InterceptAPI(BaseModel):
    """Definition of the Intercept of the Linear of the models distributions."""

    max: Optional[float] = Field(default=None, description="Maximum intercept.")
    min: Optional[int] = Field(default=None, description="Minimum intercept.")
    vary: bool = Field(default=True, description="Vary the intercept.")
    value: Optional[float] = Field(default=None, description="Initial intercept value.")
    expr: Optional[str] = Field(default=None, description=__description__)

class KurtosisAPI(BaseModel):
    """Definition of the kurtosis of the models distributions."""

    max: Optional[float] = Field(default=None, description="Maximum kurtosis.")
    min: Optional[int] = Field(default=None, description="Minimum kurtosis.")
    vary: bool = Field(default=True, description="Vary the kurtosis.")
    value: Optional[float] = Field(default=None, description="Initial kurtosis value.")
    expr: Optional[str] = Field(default=None, description=__description__)

class LinearAPI(BaseModel):
    """Definition of the Linear of the models distributions."""

    slope: SlopeAPI = SlopeAPI()
    intercept: InterceptAPI = InterceptAPI()

class LogAPI(BaseModel):
    """Definition of the Step of the models distributions."""

    amplitude: AmplitudeAPI = AmplitudeAPI()
    center: CenterAPI = CenterAPI()
    sigma: SigmaAPI = SigmaAPI()

class LorentzianAPI(BaseModel):
    """Definition of the Lorentzian of the models distributions."""

    amplitude: AmplitudeAPI = AmplitudeAPI()
    center: CenterAPI = CenterAPI()
    fwhml: FwhmlAPI = FwhmlAPI()

class Pearson1API(BaseModel):
    """Definition of the pearson type I of the models distributions."""

    amplitude: AmplitudeAPI = AmplitudeAPI()
    center: CenterAPI = CenterAPI()
    sigma: SigmaAPI = SigmaAPI()
    exponent: ExponentAPI = ExponentAPI()

class Pearson2API(BaseModel):
    """Definition of the pearson type II of the models distributions."""

    amplitude: AmplitudeAPI = AmplitudeAPI()
    center: CenterAPI = CenterAPI()
    sigma: SigmaAPI = SigmaAPI()
    exponent: ExponentAPI = ExponentAPI()

class Pearson3API(BaseModel):
    """Definition of the pearson type III of the models distributions."""

    amplitude: AmplitudeAPI = AmplitudeAPI()
    center: CenterAPI = CenterAPI()
    sigma: SigmaAPI = SigmaAPI()
    exponent: ExponentAPI = ExponentAPI()
    skewness: SkewnessAPI = SkewnessAPI()

class Pearson4API(BaseModel):
    """Definition of the pearson type IV of the models distributions."""

    amplitude: AmplitudeAPI = AmplitudeAPI()
    center: CenterAPI = CenterAPI()
    sigma: SigmaAPI = SigmaAPI()
    exponent: ExponentAPI = ExponentAPI()
    skewness: SkewnessAPI = SkewnessAPI()
    kurtosis: KurtosisAPI = KurtosisAPI()

class Polynomia2API(BaseModel):
    """Definition of the second order polynomial of the models distributions."""

    coefficient0: CoefficientAPI = CoefficientAPI()
    coefficient1: CoefficientAPI = CoefficientAPI()
    coefficient2: CoefficientAPI = CoefficientAPI()

class Polynomia3API(BaseModel):
    """Definition of the third order polynomial of the models distributions."""

    coefficient0: CoefficientAPI = CoefficientAPI()
    coefficient1: CoefficientAPI = CoefficientAPI()
    coefficient2: CoefficientAPI = CoefficientAPI()
    coefficient3: CoefficientAPI = CoefficientAPI()

class PowerAPI(BaseModel):
    """Definition of the Power of the models distributions."""

    amplitude: AmplitudeAPI = AmplitudeAPI()
    exponent: ExponentAPI = ExponentAPI()
    intercept: InterceptAPI = InterceptAPI()

class PseudovoigtAPI(BaseModel):
    """Definition of the Pseudovoigt of the models distributions."""

    amplitude: AmplitudeAPI = AmplitudeAPI()
    center: CenterAPI = CenterAPI()
    fwhmg: FwhmgAPI = FwhmgAPI()
    fwhml: FwhmlAPI = FwhmlAPI()

class SigmaAPI(BaseModel):
    """Definition of the Sigma of the models distributions."""

    max: Optional[float] = Field(default=None, description="Maximum sigma.")
    min: Optional[int] = Field(default=None, description="Minimum sigma.")
    vary: bool = Field(default=True, description="Vary the sigma.")
    value: Optional[float] = Field(default=None, description="Initial sigma value.")
    expr: Optional[str] = Field(default=None, description=__description__)

class SkewnessAPI(BaseModel):
    """Definition of the skewness of the models distributions."""

    max: Optional[float] = Field(default=None, description="Maximum skewness.")
    min: Optional[int] = Field(default=None, description="Minimum skewness.")
    vary: bool = Field(default=True, description="Vary the skewness.")
    value: Optional[float] = Field(default=None, description="Initial skewness value.")
    expr: Optional[str] = Field(default=None, description=__description__)

class SlopeAPI(BaseModel):
    """Definition of the Slope of the Linear of the models distributions."""

    max: Optional[float] = Field(default=None, description="Maximum slope.")
    min: Optional[int] = Field(default=None, description="Minimum slope.")
    vary: bool = Field(default=True, description="Vary the slope.")
    value: Optional[float] = Field(default=None, description="Inital slope value.")
    expr: Optional[str] = Field(default=None, description=__description__)

class VoigtAPI(BaseModel):
    """Definition of the Voigt of the models distributions."""

    center: CenterAPI = CenterAPI()
    fwhmv: FwhmvAPI = FwhmvAPI()
    gamma: GammaAPI = GammaAPI()

class ColorAPI(BaseModel):
    """Definition of the colors of the plotly figure."""

    intensity: str = Field(
        default=PlotlyColors[0], description="Color of the spectrum-intensity."
    )
    residual: str = Field(
        default=PlotlyColors[1], description="Color of the residuals."
    )
    fit: str = Field(default=PlotlyColors[5], description="Color of the fit.")
    components: str = Field(
        default=PlotlyColors[6], description="Color of the components, mainly peaks."
    )
    bars: List[str] = Field(
        default=[i for j in zip(Teal_r, Purp_r) for i in j],
        description="Color of the bar plot of the metrics.",
    )
    lines: List[str] = Field(
        default=Burg, description="Color of the lines of the plot."
    )
    paper: str = Field(default="white", description="Color of the paper.")
    plot: str = Field(default="white", description="Color of the plot.")
    color: str = Field(default="black", description="Color of the text.")
    grid: str = Field(default="lightgrey", description="Color of the grid.")
    line: str = Field(default="black", description="Color of the bottom and side line.")
    zero_line: str = Field(default="grey", description="Color of the zero line.")
    ticks: str = Field(default="black", description="Color of the ticks.")
    font: str = Field(default="black", description="Font color of the plot.")

    @field_validator(
        "paper",
        "layout",
        "grid",
        "line",
        "zero_line",
        "ticks",
        "font",
        check_fields=False,
    )
    @classmethod
    def transparent_rgb(cls, v: str) -> str:
        """Convert string to transparent RGB color.

        Args:
            v (str): One of the key-words of the validator decorator.

        Returns:
            str: Translate the word `transparent` to the rgb value `rgba(0,0,0,0)`.
        """
        return "rgba(0,0,0,0)" if "transparent" in v.lower() else v

class FnameAPI(BaseModel):
    """Definition of the file name."""

    fname: str = Field(..., description="Name of the file to save.")
    suffix: str = Field(..., description="Suffix of the file to save.")
    prefix: Optional[str] = Field(
        default=None, description="Prefix of the file to save."
    )
    folder: Optional[str] = Field(default=None, description="Folder to save the file.")

class FontAPI(BaseModel):
    """Definition of the used font of the plotly figure."""

    family: str = Field(
        default="Open Sans, monospace", description="Font family of the plot."
    )
    size: int = Field(default=12, description="Font size of the plot.")
    color: str = Field(default="black", description="Font color of the plot.")

class GridAPI(BaseModel):
    """Definition of the grid of the plotly figure."""

    show: bool = Field(default=True, description="Show grid lines.")
    ticks: str = Field(default="outside", description="Show grid ticks.")
    dash: str = Field(default="dot", description="Show grid dashes.")

class LegendAPI(BaseModel):
    """Definition of the legend of the plotly figure."""

    orientation: str = Field(default="h", description="Orientation of the legend.")
    yanchor: str = Field(default="bottom", description="Y anchor of the legend.")
    y: float = Field(default=1.02, description="Y position of the legend.")
    xanchor: str = Field(default="right", description="X anchor of the legend.")
    x: float = Field(default=1, description="X position of the legend.")

class MetricAPI(BaseModel):
    """Definition of the residual plot (Y-Axis) of the plotly figure."""

    name_0: str = Field(
        default="Metrics", description="Name of the first metrics-axis of the plot."
    )
    unit_0: Optional[str] = Field(
        default="a.u.", description="Name of the first metrics-axis units of the plot."
    )
    name_1: str = Field(
        default="Metrics", description="Name of the second metrics-axis of the plot."
    )
    unit_1: Optional[str] = Field(
        default="a.u.", description="Name of the second metrics-axis units of the plot."
    )

class PlotAPI(BaseModel):
    """Definition of the plotly figure."""

    x: str = Field(..., description="Name of the x column to plot.")
    y: Union[str, List[str]] = Field(
        ..., description="List of the names of the y columns to plot."
    )
    title: Optional[str] = Field(None, description="Title of the plot.")
    xaxis_title: XAxisAPI = XAxisAPI()
    yaxis_title: YAxisAPI = YAxisAPI()
    residual_title: ResidualAPI = ResidualAPI()
    metric_title: MetricAPI = MetricAPI()
    run_title: RunAPI = RunAPI()
    legend_title: str = Field(default="Spectra", description="Title of the legend.")
    show_legend: bool = Field(default=True, description="Show legend.")
    legend: LegendAPI = LegendAPI()
    font: FontAPI = FontAPI()
    minor_ticks: bool = Field(default=True, description="Show minor ticks.")
    color: ColorAPI = ColorAPI()
    grid: GridAPI = GridAPI()
    size: Tuple[int, Tuple[int, int]] = Field(
        default=(800, (600, 300)), description="Size of the fit- and metric-plot."
    )

class ResidualAPI(BaseModel):
    """Definition of the residual plot (Y-Axis) of the plotly figure."""

    name: str = Field(
        default="Residuals", description="Name of the residual-axis of the plot."
    )
    unit: Optional[str] = Field(
        default="a.u.", description="Name of the residual-axis units of the plot."
    )

class RunAPI(BaseModel):
    """Definition of the residual plot (Y-Axis) of the plotly figure."""

    name: str = Field(default="Run", description="Name of the Run-axis of the plot.")
    unit: Optional[str] = Field(
        default="#", description="Name of the run-axis units of the plot."
    )

class XAxisAPI(BaseModel):
    """Defintion of the X-Axis of the plotly figure."""

    name: str = Field(default="Energy", description="Name of the x-axis of the plot.")
    unit: Optional[str] = Field(
        default="eV", description="Name of the x-axis units of the plot."
    )

class YAxisAPI(BaseModel):
    """Defintion of the Y-Axis of the plotly figure."""

    name: str = Field(
        default="Intensity", description="Name of the y-axis of the plot."
    )
    unit: Optional[str] = Field(
        default="a.u.", description="Name of the y-axis units of the plot."
    )

class CreditsAPI(BaseModel):
    """Credits API model."""

    dtale: str = f"dtale v{dtale_version}"
    emcee: str = f"emcee v{emcee_version}"
    itables: str = f"itables v{itables_version}"
    lmfit: str = f"lmfit v{lmfit_version}"
    numdifftools: str = f"numdifftools v{numdifftools_version}"
    numpy: str = f"numpy v{numpy_version}"
    pandas: str = f"pandas v{pandas_version}"
    plotly: str = f"plotly v{plotly_version}"
    pydantic: str = f"pydantic v{pydantic_version}"
    scipy: str = f"scipy v{scipy_version}"
    sklearn: str = f"sklearn v{sklearn_version}"
    statsmodels: str = f"statsmodels v{statsmodels_version}"

class FitMethodAPI(BaseModel):
    """Fit method API model."""

    global_fitting: Union[bool, int] = Field(
        default=False,
        description="Fitting in the global fashion",
    )
    confidence_interval: Union[bool, Dict[str, Any]] = Field(
        ...,
        description="Settings for the confidence interval calculation",
    )
    configurations: Dict[str, Any] = Field(
        ..., description="Settings for the fitting configuration"
    )
    settings_solver_models: Dict[str, Any] = Field(
        ...,
        description="Settings for the solver models including minimizer and optimizer",
    )

class InputAPI(BaseModel):
    """Input API for the report endpoint."""

    description: DescriptionAPI = DescriptionAPI()
    credits: CreditsAPI = CreditsAPI()
    initial_model: List[Dict[str, Dict[str, Dict[str, Any]]]] = Field(
        ..., description="Initial model for the fit"
    )
    method: FitMethodAPI = Field(
        ..., description="Fitting method with optional including of confidence interval"
    )
    pre_processing: DataPreProcessingAPI = Field(..., description="Data pre-processing")

class OutputAPI(BaseModel):
    """Output API for the report endpoint."""

    df_org: Dict[Hashable, Any] = Field(
        ...,
        description="DataFrame of the original data via 'records' orient",
    )
    df_fit: Dict[Hashable, Any] = Field(
        ...,
        description="DataFrame of the fitted data via 'records' orient",
    )
    df_pre: Dict[Hashable, Any] = Field(
        default={},
        description="DataFrame of the pre-processed data via 'records' orient",
    )
    model_config = ConfigDict(arbitrary_types_allowed=True)

class ReportAPI(BaseModel):
    """Definition of the report model."""

    input: InputAPI = Field(
        ...,
        description="Input data for the report.",
    )
    solver: SolverAPI = Field(
        ...,
        description="Solver data for the report.",
    )
    output: OutputAPI = Field(
        ...,
        description="Output data for the report.",
    )

class SolverAPI(BaseModel):
    """Solver API for the report endpoint."""

    goodness_of_fit: Dict[str, float] = Field(..., description="Goodness of fit")
    regression_metrics: Dict[str, List[Any]] = Field(
        ..., description="Regression metrics"
    )
    descriptive_statistic: Dict[str, List[Any]] = Field(
        ..., description="Descriptive statistic"
    )
    linear_correlation: Dict[str, List[Any]] = Field(
        ..., description="Linear correlation"
    )
    component_correlation: Dict[str, Dict[str, Any]] = Field(
        default={},
        description="Linear correlation of each attribute of components. if possible",
    )
    confidence_interval: Dict[str, Any] = Field(
        default={}, description="Confidence interval, if possible"
    )
    covariance_matrix: Dict[str, Dict[str, Any]] = Field(
        default={}, description="Covariance matrix, if possible"
    )
    variables: Dict[str, Dict[str, Any]] = Field(
        ...,
        description="Variables with their initial, optimized and optional error values",
    )
    errorbars: Dict[str, Any] = Field(
        default={},
        description="Error bar comment if values reach initial value or boundary",
    )
    computational: Dict[str, Any] = Field(
        ...,
        description="Computational information like number of function evaluations",
    )

class AutopeakAPI(BaseModel):
    """Definition of the auto detection of peak command line argument.

    The auto detection of peaks is performed by the SpectraFit tools. Here is listed the
    set of parameters that are used to control the auto detection of peaks according to
    the following `scipy.signal.find_peaks` -module; source:
    [https://docs.scipy.org/doc/scipy/reference/generated/scipy.signal.find_peaks.html](
    https://docs.scipy.org/doc/scipy/reference/generated/scipy.signal.find_peaks.html
    )
    """

    modeltype: Optional[str] = None
    height: Optional[List[float]] = None
    threshold: Optional[List[float]] = None
    distance: Optional[int] = None
    prominence: Optional[List[float]] = None
    width: Optional[List[float]] = None
    wlen: Optional[int] = None
    rel_height: Optional[float] = None
    plateau_size: Optional[float] = None
    model_config = ConfigDict(extra="forbid", validate_assignment=True)

class ColumnNamesAPI(BaseModel):
    """Definition of the column names of the exported model."""

    energy: str = "energy"
    intensity: str = "intensity"
    residual: str = "residual"
    fit: str = "fit"

class DataPreProcessingAPI(BaseModel):
    """Definition of the data preprocessing command line argument."""

    oversampling: bool = Field(
        default=False,
        description="Oversampling the spectra by using factor of 5; default to False.",
    )
    energy_start: Optional[float] = Field(
        default=None,
        description="Start energy of the spectra; default to None.",
    )
    energy_stop: Optional[float] = Field(
        default=None,
        description="Stop energy of the spectra; default to None.",
    )
    smooth: int = Field(
        default=0,
        ge=0,
        description="Smoothing level of the spectra; default to 0.",
    )
    shift: float = Field(
        default=0,
        description="Shift the energy axis; default to 0.",
    )
    column: List[Union[int, str]] = Field(
        min_length=1,
        default=[0, 1],
        description="Column of the data.",
    )

class GeneralSolverModelsAPI(BaseModel):
    """Definition of the general solver of SpectraFit.

    !!! note "GeneralSolver"

        The General Solver combines the settings for `lmfit` by adding the global
        fitting settings.
    """

    global_: int = GlobalFittingAPI().global_
    minimizer: Dict[str, Any] = SolverModelsAPI().minimizer
    optimizer: Dict[str, Any] = SolverModelsAPI().optimizer

class GlobalFittingAPI(BaseModel):
    """Definition of the global fitting routine."""

    global_: int = Field(default=0, ge=0, le=2, description="Global fitting routine.")

class SolverModelsAPI(BaseModel):
    """Definition of the solver of SpectraFit."""

    minimizer: Dict[str, Any] = Field(
        default={"nan_policy": "propagate", "calc_covar": True},
        description="Minimizer options",
    )
    optimizer: Dict[str, Any] = Field(
        default={"max_nfev": None, "method": "leastsq"},
        description="Optimzer options",
    )